BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB013C04LP1|AL426489
(858 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig375 872 0.0
3x_Contig296 472 e-133
>3x_Contig375
Length = 1974
Score = 872 bits (438), Expect = 0.0
Identities = 459/468 (98%), Gaps = 1/468 (0%)
Strand = Plus / Minus
Query: 391 tattcaagcgatcatgcacattttccagacaatggggcttcgctgtgtcatatttttgaa 450
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1971 tattcaagcgatcatgcacattt-ccagacaatggggcttcgctgtgtcatatttttgaa 1913
Query: 451 acagatcattcctggatttatactggttatgcacacatgtccaccttcacttcttgagct 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1912 acagatcattcctggatttatactggttatgcacacatgtccaccttcacttcttgagct 1853
Query: 511 ctacttccaacagctcagtgttttgatttcaattgtgaaacaacacatcagactacatgt 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1852 ctacttccaacagctcagtgttttgatttcaattgtgaaacaacacatcagactacatgt 1793
Query: 571 gtctgaaattgtggaagtaatctcagaattcttccctatcgtaaagctacaattaactat 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1792 gtctgaaattgtggaagtaatctcagaattcttccctatcgtaaagctacaattaactat 1733
Query: 631 catctcggttatcgaatcactatcaagagccttagaaggagaattcaatyyttwttttty 690
||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 1732 catctcggttatcgaatcactatcaagagccttagaaggagaattcaatccttatttacc 1673
Query: 691 ttwtatactatctttgtttttggatgttttggaaaaagaccagtcgaataagaaggttgt 750
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1672 taatatactatctttgtttttggatgttttggaaaaagaccagtcgaataagaaggttgt 1613
Query: 751 ctcaattagaatattgaagtcattggtagtttttggaccacatctagaggaatatgctca 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1612 ctcaattagaatattgaagtcattggtagtttttggaccacatctagaggaatatgctca 1553
Query: 811 cctcgtactgccaactatcataaaactatcggagtttagctcaggaaa 858
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1552 cctcgtactgccaactatcataaaactatcggagtttagctcaggaaa 1505
>3x_Contig296
Length = 1333
Score = 472 bits (237), Expect = e-133
Identities = 283/297 (95%), Gaps = 1/297 (0%)
Strand = Plus / Minus
Query: 1 atcagtctaactcattcaaaagaaatgcagcattgaaagcattaggccaattatctgcct 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 315 atcagtctaactcattcaaaagaaatgcagctttgaaagcattaggccaattatctgcct 256
Query: 61 cttcgggatatgttattgatccgctattagattatcctgaattacttggcgttcttctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 cttcgggatatgttattgatccgctattagattatcctgaattacttggcgttcttctca 196
Query: 121 atattttaaaatctgaaagttcacagaacattcgtagagaaaccgtcaggctgataggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 atattttaaaatctgaaagttcacagaacattcgtagagaaaccgtcaggctgataggta 136
Query: 181 ttcttggtgctttagatccgtataaacacagagaagtggaact-acatctagtacaaata 239
|||||||||||||||||| |||||||||||||||||||||| | |||||||||| |||||
Sbjct: 135 ttcttggtgctttagatcagtataaacacagagaagtggaagtcacatctagtaaaaata 76
Query: 240 ttacggtagaacaaaatgcccctccaattgatgtggctttgttaatgcaaggtatgt 296
||| ||||||| |||||| | ||||||||||| ||||||||||||||||||||
Sbjct: 75 ttaaggtagaaaaaaatgaaaataaaattgatgtggatttgttaatgcaaggtatgt 19
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6318
Number of Sequences: 1807
Number of extensions: 6318
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 2
length of query: 858
length of database: 10,358,551
effective HSP length: 16
effective length of query: 842
effective length of database: 10,329,639
effective search space: 8697556038
effective search space used: 8697556038
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)